PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000586.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 426aa    MW: 48100.5 Da    PI: 6.91
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000586.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.91.4e-451172463135
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssgkaaksa 94 
                  ++kdrhskihT++g+RdRR+Rls+++ ++fFdLqd+LGfdk+sktieWL++++k+ ikelt++   +    ++c    +++  ss+      + ++ +
  CCG000586.1 117 TGKDRHSKIHTAQGPRDRRMRLSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSvpgG---RRRCsicADGKTISSTP-----EMSNPK 206
                  68*************************************************************5442...44443225666666665.....333333 PP

          TCP  95 akskksqksaasalnlak.esrakarararertrekmriknk 135
                  +k++k+ +++    nl + +sr+karararertre+m+++  
  CCG000586.1 207 EKRSKKVHKPI--FNLVDrDSREKARARARERTRERMKNQGI 246
                  45555666665..888777*******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-37117243IPR005333Transcription factor, TCP
PROSITE profilePS5136936.525118176IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.374223240IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MFSSSSSFNP FDQYANHTMI ASTENPSSIE SCSQTFLQHF PHPFFDVDDL LVGELLSQQQ  60
QQQEEEEEVL GSNTALAVEA HDPQTIPTAS NEETKINNKK KKSNVDTSKQ PIRQRRTGKD  120
RHSKIHTAQG PRDRRMRLSL QISRKFFDLQ DMLGFDKASK TIEWLFTKSK AGIKELTDSV  180
PGGRRRCSIC ADGKTISSTP EMSNPKEKRS KKVHKPIFNL VDRDSREKAR ARARERTRER  240
MKNQGIDTSS DRSSQANPNK LEKLFESSSP LEYGENLASV NQEMSSPVKV GDVKESSNHD  300
LLPHQMDYVS ITGNFFWVPS SPRSPSIPDF SESVALPGGT NCKDEFLPLN SDMTNDRIQY  360
KYNALTNMKL PTLNAHEESP NSIFMNMPNP NDQNSISILM TTTTNGNANQ SSSNFFLAED  420
HFECLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229241RARARERTRERMK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0125150.0AY012515.1 Populus x canescens teosinte-branched-like protein 1 (TB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312378.20.0hypothetical protein POPTR_0008s11470g
TrEMBLQ9FUE70.0Q9FUE7_POPDE; Teosinte-branched-like protein
STRINGPOPTR_0008s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-31TCP domain protein 12